Chapter 2 Getting data from GEO

We download GEO supplementary files to obtain realistic identifiers.

library(GEOquery)

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## Attaching package: 'generics'

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## Setting options('download.file.method.GEOquery'='auto')

## Setting options('GEOquery.inmemory.gpl'=FALSE)

source("./fetch_geo_supp.R")

fetch_geo_supp(gse = "GSE233947")
fetch_geo_supp(gse = "GSE119732")